HCSGD entry for RPN1
1. General information
| Official gene symbol | RPN1 |
|---|---|
| Entrez ID | 6184 |
| Gene full name | ribophorin I |
| Other gene symbols | OST1 RBPH1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004579 | Dolichyl-diphosphooligosaccharide-protein glycotransferase activity | IEA TAS | molecular_function |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA ISS TAS | cellular_component |
| GO:0005791 | Rough endoplasmic reticulum | ISS | cellular_component |
| GO:0006412 | Translation | TAS | biological_process |
| GO:0006464 | Cellular protein modification process | TAS | biological_process |
| GO:0006486 | Protein glycosylation | IEA | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0008250 | Oligosaccharyltransferase complex | TAS | cellular_component |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0018279 | Protein N-linked glycosylation via asparagine | TAS | biological_process |
| GO:0042470 | Melanosome | IEA | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2834379431 | 0.3101168839 | 0.9822256977 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1059327794 |
| GSE13712_SHEAR | Up | 0.0696271258 |
| GSE13712_STATIC | Up | 0.2525867433 |
| GSE19018 | Up | 0.2794633200 |
| GSE19899_A1 | Down | -0.1942410744 |
| GSE19899_A2 | Down | -0.1009939593 |
| PubMed_21979375_A1 | Down | -0.0717456617 |
| PubMed_21979375_A2 | Down | -0.2105978867 |
| GSE35957 | Down | -0.4974871807 |
| GSE36640 | Up | 0.3020475282 |
| GSE54402 | Up | 0.0038964246 |
| GSE9593 | Up | 0.0274925390 |
| GSE43922 | Up | 0.0992837727 |
| GSE24585 | Down | -0.1512253560 |
| GSE37065 | Up | 0.0759563186 |
| GSE28863_A1 | Up | 0.3971158132 |
| GSE28863_A2 | Up | 0.7334694791 |
| GSE28863_A3 | Down | -0.4410665815 |
| GSE28863_A4 | Down | -0.3057946476 |
| GSE48662 | Down | -0.2058395854 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT020068 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030197 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT048357 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
