HCSGD entry for RPL38

1. General information

Official gene symbolRPL38
Entrez ID6169
Gene full nameribosomal protein L38
Other gene symbolsL38
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000184Nuclear-transcribed mRNA catabolic process, nonsense-mediated decayTASbiological_process
GO:0001501Skeletal system developmentIEAbiological_process
GO:0001503OssificationIEAbiological_process
GO:0003723RNA bindingTASmolecular_function
GO:0003735Structural constituent of ribosomeIEA NASmolecular_function
GO:0005829CytosolTAScellular_component
GO:0005840RibosomeIEAcellular_component
GO:0006412TranslationIEA NAS TASbiological_process
GO:0006413Translational initiationTASbiological_process
GO:0006414Translational elongationTASbiological_process
GO:0006415Translational terminationTASbiological_process
GO:0006417Regulation of translationIEAbiological_process
GO:0006614SRP-dependent cotranslational protein targeting to membraneTASbiological_process
GO:0007605Sensory perception of soundIEAbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0016032Viral processTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0016071MRNA metabolic processTASbiological_process
GO:0019058Viral life cycleTASbiological_process
GO:0019083Viral transcriptionTASbiological_process
GO:0022625Cytosolic large ribosomal subunitIDAcellular_component
GO:0033291Eukaryotic 80S initiation complexIEAcellular_component
GO:003446390S preribosome assemblyIEAbiological_process
GO:0042474Middle ear morphogenesisIEAbiological_process
GO:0044267Cellular protein metabolic processTASbiological_process
GO:0048318Axial mesoderm developmentIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.74936541920.53669486720.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0062757421
GSE13712_SHEARDown-0.2063951587
GSE13712_STATICDown-0.1908747134
GSE19018Up0.1323692962
GSE19899_A1Up0.1075218800
GSE19899_A2Down-0.0324885363
PubMed_21979375_A1Up0.2295780863
PubMed_21979375_A2Down-0.2978220865
GSE35957Up0.0924942379
GSE36640Down-0.0871926340
GSE54402Up0.1764409787
GSE9593Down-0.2846847456
GSE43922Up0.0616355275
GSE24585Up0.1564601300
GSE37065Down-0.1448403050
GSE28863_A1Down-0.0241663678
GSE28863_A2Up0.0450351231
GSE28863_A3Up0.1219059603
GSE28863_A4Up0.1331745696
GSE48662Down-0.3680105133

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.