HCSGD entry for RPL29
1. General information
| Official gene symbol | RPL29 |
|---|---|
| Entrez ID | 6159 |
| Gene full name | ribosomal protein L29 |
| Other gene symbols | HIP HUMRPL29 L29 RPL29P10 RPL29_3_370 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000184 | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | TAS | biological_process |
| GO:0003723 | RNA binding | TAS | molecular_function |
| GO:0003735 | Structural constituent of ribosome | IEA NAS | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005840 | Ribosome | IEA | cellular_component |
| GO:0006412 | Translation | IEA NAS TAS | biological_process |
| GO:0006413 | Translational initiation | TAS | biological_process |
| GO:0006414 | Translational elongation | TAS | biological_process |
| GO:0006415 | Translational termination | TAS | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | TAS | biological_process |
| GO:0007566 | Embryo implantation | TAS | biological_process |
| GO:0008201 | Heparin binding | IEA | molecular_function |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0019058 | Viral life cycle | TAS | biological_process |
| GO:0019083 | Viral transcription | TAS | biological_process |
| GO:0022625 | Cytosolic large ribosomal subunit | IDA | cellular_component |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8827368793 | 0.1723549485 | 0.9999902473 | 0.8042068520 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0696917421 |
| GSE13712_SHEAR | Down | -0.2661586387 |
| GSE13712_STATIC | Down | -0.1652518953 |
| GSE19018 | Up | 0.2082483733 |
| GSE19899_A1 | Up | 0.0015764205 |
| GSE19899_A2 | Down | -0.3346753678 |
| PubMed_21979375_A1 | Up | 0.7464789567 |
| PubMed_21979375_A2 | Down | -0.3061790735 |
| GSE35957 | Down | -0.2834470586 |
| GSE36640 | Down | -0.4668642547 |
| GSE54402 | Up | 0.3306375590 |
| GSE9593 | Up | 0.0263582356 |
| GSE43922 | Up | 0.2082054441 |
| GSE24585 | Up | 0.0383388651 |
| GSE37065 | Down | -0.6972461641 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.2861606616 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-125b-5p | MIMAT0000423 | MIRT005011 | Microarray | Functional MTI (Weak) | 17891175 |
| hsa-miR-1914-5p | MIMAT0007889 | MIRT035785 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-760 | MIMAT0004957 | MIRT036750 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-1-5p | MIMAT0004507 | MIRT038917 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-652-3p | MIMAT0003322 | MIRT039506 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040029 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043525 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045203 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
