HCSGD entry for RPL6

1. General information

Official gene symbolRPL6
Entrez ID6128
Gene full nameribosomal protein L6
Other gene symbolsL6 SHUJUN-2 TAXREB107 TXREB1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000184Nuclear-transcribed mRNA catabolic process, nonsense-mediated decayTASbiological_process
GO:0003677DNA bindingTASmolecular_function
GO:0003723RNA bindingTASmolecular_function
GO:0003735Structural constituent of ribosomeIEA NASmolecular_function
GO:0005829CytosolTAScellular_component
GO:0005840RibosomeIEAcellular_component
GO:0006355Regulation of transcription, DNA-templatedTASbiological_process
GO:0006412TranslationIEA NAS TASbiological_process
GO:0006413Translational initiationTASbiological_process
GO:0006414Translational elongationTASbiological_process
GO:0006415Translational terminationTASbiological_process
GO:0006614SRP-dependent cotranslational protein targeting to membraneTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0016032Viral processTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0016071MRNA metabolic processTASbiological_process
GO:0019058Viral life cycleTASbiological_process
GO:0019083Viral transcriptionTASbiological_process
GO:0022625Cytosolic large ribosomal subunitIDAcellular_component
GO:0044267Cellular protein metabolic processTASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.95312470270.47826021050.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0003591461
GSE13712_SHEARDown-0.2005810002
GSE13712_STATICDown-0.1209620056
GSE19018Down-0.0282473878
GSE19899_A1Up0.0621055287
GSE19899_A2Down-0.1446179716
PubMed_21979375_A1Up0.0653793173
PubMed_21979375_A2Down-0.0418516309
GSE35957Down-0.0674545729
GSE36640Down-0.1014762987
GSE54402Up0.0893303330
GSE9593Down-0.0278777499
GSE43922--
GSE24585--
GSE37065--
GSE28863_A1Up0.0268242298
GSE28863_A2Up0.2514597971
GSE28863_A3Down-0.2241712524
GSE28863_A4Down-0.0113928140
GSE48662Down-0.3833574911

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-26b-5pMIMAT0000083MIRT030194MicroarrayFunctional MTI (Weak)19088304
hsa-miR-16-5pMIMAT0000069MIRT032025ProteomicsFunctional MTI (Weak)18668040
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.