HCSGD entry for RBMS1
1. General information
| Official gene symbol | RBMS1 |
|---|---|
| Entrez ID | 5937 |
| Gene full name | RNA binding motif, single stranded interacting protein 1 |
| Other gene symbols | C2orf12 HCC-4 MSSP MSSP-1 MSSP-2 MSSP-3 SCR2 YC1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003690 | Double-stranded DNA binding | NAS | molecular_function |
| GO:0003697 | Single-stranded DNA binding | NAS | molecular_function |
| GO:0003723 | RNA binding | IEA NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | NAS | cellular_component |
| GO:0006260 | DNA replication | NAS | biological_process |
| GO:0006396 | RNA processing | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2947269595 | 0.5806591429 | 0.9941997951 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0194383110 |
| GSE13712_SHEAR | Up | 0.1622524705 |
| GSE13712_STATIC | Up | 0.0628651324 |
| GSE19018 | Up | 0.2089587787 |
| GSE19899_A1 | Down | -0.5930847435 |
| GSE19899_A2 | Up | 0.0656576656 |
| PubMed_21979375_A1 | Up | 0.0842586889 |
| PubMed_21979375_A2 | Up | 0.3711895708 |
| GSE35957 | Down | -0.0508122799 |
| GSE36640 | Up | 0.4263737392 |
| GSE54402 | Down | -0.1999548213 |
| GSE9593 | Up | 0.1010795810 |
| GSE43922 | Down | -0.1595417403 |
| GSE24585 | Up | 0.1371191586 |
| GSE37065 | Up | 0.1854245571 |
| GSE28863_A1 | Up | 0.3294377578 |
| GSE28863_A2 | Up | 0.0597538413 |
| GSE28863_A3 | Down | -0.3822632391 |
| GSE28863_A4 | Down | -0.1275515860 |
| GSE48662 | Up | 0.2733100630 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT005194 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022190 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031782 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1249 | MIMAT0005901 | MIRT035866 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
