HCSGD entry for PRDM13
1. General information
| Official gene symbol | PRDM13 |
|---|---|
| Entrez ID | 59336 |
| Gene full name | PR domain containing 13 |
| Other gene symbols | MU-MB-20.220 PFM10 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0008168 | Methyltransferase activity | IEA | molecular_function |
| GO:0022008 | Neurogenesis | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4023713309 | 0.8491002090 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0841728698 |
| GSE13712_SHEAR | Up | 0.1144614120 |
| GSE13712_STATIC | Down | -0.0061157498 |
| GSE19018 | Down | -0.1694231750 |
| GSE19899_A1 | Up | 0.0845907789 |
| GSE19899_A2 | Down | -0.0073691276 |
| PubMed_21979375_A1 | Up | 0.2526388337 |
| PubMed_21979375_A2 | Down | -0.0453837518 |
| GSE35957 | Up | 0.0529812401 |
| GSE36640 | Up | 0.0691429750 |
| GSE54402 | Up | 0.0494491664 |
| GSE9593 | Up | 0.1764787779 |
| GSE43922 | Up | 0.0828731435 |
| GSE24585 | Down | -0.1098972398 |
| GSE37065 | Down | -0.0386275696 |
| GSE28863_A1 | Down | -0.1656619001 |
| GSE28863_A2 | Up | 0.0121154953 |
| GSE28863_A3 | Up | 0.4096160988 |
| GSE28863_A4 | Up | 0.0037615053 |
| GSE48662 | Up | 0.4585478628 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022704 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029490 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
