HCSGD entry for ARID4A
1. General information
| Official gene symbol | ARID4A |
|---|---|
| Entrez ID | 5926 |
| Gene full name | AT rich interactive domain 4A (RBP1-like) |
| Other gene symbols | RBBP-1 RBBP1 RBP-1 RBP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | TAS | molecular_function |
| GO:0005634 | Nucleus | IDA IEA TAS | cellular_component |
| GO:0006349 | Regulation of gene expression by genetic imprinting | IEA | biological_process |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0017053 | Transcriptional repressor complex | IDA | cellular_component |
| GO:0034773 | Histone H4-K20 trimethylation | IEA | biological_process |
| GO:0036124 | Histone H3-K9 trimethylation | IEA | biological_process |
| GO:0045892 | Negative regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0048821 | Erythrocyte development | IEA | biological_process |
| GO:0080182 | Histone H3-K4 trimethylation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0817542229 | 0.6551789370 | 0.6029793500 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2025997978 |
| GSE13712_SHEAR | Down | -0.1380917965 |
| GSE13712_STATIC | Up | 0.1561718453 |
| GSE19018 | Up | 0.4215265959 |
| GSE19899_A1 | Up | 0.1226825656 |
| GSE19899_A2 | Down | -0.5330824228 |
| PubMed_21979375_A1 | Down | -0.4110569194 |
| PubMed_21979375_A2 | Down | -0.0248821884 |
| GSE35957 | Up | 0.4708542793 |
| GSE36640 | Up | 0.5575264683 |
| GSE54402 | Down | -0.1640179452 |
| GSE9593 | Down | -0.0121747427 |
| GSE43922 | Up | 0.0551780549 |
| GSE24585 | Up | 0.6780168231 |
| GSE37065 | Up | 0.0606385639 |
| GSE28863_A1 | Up | 0.5845808618 |
| GSE28863_A2 | Up | 0.5123820285 |
| GSE28863_A3 | Down | -0.2803723061 |
| GSE28863_A4 | Up | 0.1293990562 |
| GSE48662 | Down | -0.3841240652 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018511 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030996 | Microarray | Functional MTI (Weak) | 18591254 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
