HCSGD entry for RAB40C
1. General information
| Official gene symbol | RAB40C |
|---|---|
| Entrez ID | 57799 |
| Gene full name | RAB40C, member RAS oncogene family |
| Other gene symbols | RARL RASL8C |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016567 | Protein ubiquitination | IEA | biological_process |
| GO:0019003 | GDP binding | IEA | molecular_function |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4270094259 | 0.9356602181 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0993003422 |
| GSE13712_SHEAR | Up | 0.0026827923 |
| GSE13712_STATIC | Up | 0.0005441523 |
| GSE19018 | Up | 0.0164234261 |
| GSE19899_A1 | Up | 0.0461264919 |
| GSE19899_A2 | Up | 0.2079130430 |
| PubMed_21979375_A1 | Up | 0.2496243346 |
| PubMed_21979375_A2 | Up | 0.2700582832 |
| GSE35957 | Down | -0.1843774028 |
| GSE36640 | Up | 0.1678447050 |
| GSE54402 | Up | 0.2401357379 |
| GSE9593 | Down | -0.0316109753 |
| GSE43922 | Up | 0.0540612007 |
| GSE24585 | Up | 0.0554661087 |
| GSE37065 | Down | -0.1852275644 |
| GSE28863_A1 | Down | -0.0221650367 |
| GSE28863_A2 | Down | -0.0070168582 |
| GSE28863_A3 | Up | 0.1144459798 |
| GSE28863_A4 | Down | -0.0083828668 |
| GSE48662 | Up | 0.4322384254 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT041652 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
