HCSGD entry for PHRF1
1. General information
| Official gene symbol | PHRF1 |
|---|---|
| Entrez ID | 57661 |
| Gene full name | PHD and ring finger domains 1 |
| Other gene symbols | RNF221 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0006366 | Transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0019904 | Protein domain specific binding | IEA | molecular_function |
| GO:0070063 | RNA polymerase binding | ISS | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6536016071 | 0.7427178413 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0880192725 |
| GSE13712_SHEAR | Down | -0.0856993496 |
| GSE13712_STATIC | Down | -0.1412741583 |
| GSE19018 | Down | -0.0496440741 |
| GSE19899_A1 | Down | -0.1517477176 |
| GSE19899_A2 | Up | 0.2982433320 |
| PubMed_21979375_A1 | Up | 0.4047630434 |
| PubMed_21979375_A2 | Up | 0.2092434184 |
| GSE35957 | Down | -0.1435270691 |
| GSE36640 | Down | -0.2009259571 |
| GSE54402 | Up | 0.1111060977 |
| GSE9593 | Down | -0.0702723787 |
| GSE43922 | Up | 0.0377662463 |
| GSE24585 | Up | 0.2245585735 |
| GSE37065 | Down | -0.0434002561 |
| GSE28863_A1 | Up | 0.0604179798 |
| GSE28863_A2 | Up | 0.1420556861 |
| GSE28863_A3 | Up | 0.1883536184 |
| GSE28863_A4 | Down | -0.0406319240 |
| GSE48662 | Down | -0.0415430950 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1229-3p | MIMAT0005584 | MIRT036274 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040686 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041602 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046812 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
