HCSGD entry for IFT80
1. General information
| Official gene symbol | IFT80 |
|---|---|
| Entrez ID | 57560 |
| Gene full name | intraflagellar transport 80 homolog (Chlamydomonas) |
| Other gene symbols | ATD2 WDR56 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001649 | Osteoblast differentiation | IEA | biological_process |
| GO:0002062 | Chondrocyte differentiation | IEA | biological_process |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005813 | Centrosome | IEA | cellular_component |
| GO:0005929 | Cilium | IEA | cellular_component |
| GO:0007224 | Smoothened signaling pathway | IEA | biological_process |
| GO:0042384 | Cilium assembly | IEA | biological_process |
| GO:0045880 | Positive regulation of smoothened signaling pathway | IEA | biological_process |
| GO:0060349 | Bone morphogenesis | IEA | biological_process |
| GO:2000051 | Negative regulation of non-canonical Wnt signaling pathway | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9617185897 | 0.0307271988 | 0.9999902473 | 0.3305151614 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4214672879 |
| GSE13712_SHEAR | Down | -0.1720383447 |
| GSE13712_STATIC | Down | -0.1455796400 |
| GSE19018 | Up | 0.2033121703 |
| GSE19899_A1 | Down | -0.2011246465 |
| GSE19899_A2 | Down | -0.5477192652 |
| PubMed_21979375_A1 | Down | -0.9463267118 |
| PubMed_21979375_A2 | Down | -0.7014708650 |
| GSE35957 | Down | -0.0447160715 |
| GSE36640 | Down | -0.4719634782 |
| GSE54402 | Up | 0.0886520267 |
| GSE9593 | Down | -0.0382006557 |
| GSE43922 | Down | -0.2379572864 |
| GSE24585 | Up | 0.3935710121 |
| GSE37065 | Up | 0.2878648402 |
| GSE28863_A1 | Up | 0.0118658495 |
| GSE28863_A2 | Down | -0.0346420204 |
| GSE28863_A3 | Down | -0.5324268779 |
| GSE28863_A4 | Down | -0.2990559465 |
| GSE48662 | Down | -0.0113017503 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019786 | Microarray | Functional MTI (Weak) | 20215506 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
