HCSGD entry for ZNF398
1. General information
| Official gene symbol | ZNF398 |
|---|---|
| Entrez ID | 57541 |
| Gene full name | zinc finger protein 398 |
| Other gene symbols | P51 P71 ZER6 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005634 | Nucleus | NAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA NAS | biological_process |
| GO:0045893 | Positive regulation of transcription, DNA-templated | NAS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3848721097 | 0.4029950686 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2574735790 |
| GSE13712_SHEAR | Down | -0.5059362908 |
| GSE13712_STATIC | Down | -0.1964819433 |
| GSE19018 | Down | -0.3609093851 |
| GSE19899_A1 | Down | -0.0952996453 |
| GSE19899_A2 | Down | -0.2120122001 |
| PubMed_21979375_A1 | Up | 0.1554118740 |
| PubMed_21979375_A2 | Up | 0.1998590288 |
| GSE35957 | Down | -0.0393852077 |
| GSE36640 | Down | -0.4148349635 |
| GSE54402 | Up | 0.1268399506 |
| GSE9593 | Up | 0.3865176021 |
| GSE43922 | Up | 0.1499815465 |
| GSE24585 | Up | 0.0177547101 |
| GSE37065 | Down | -0.0051396174 |
| GSE28863_A1 | Up | 0.4070079693 |
| GSE28863_A2 | Up | 0.6304402406 |
| GSE28863_A3 | Down | -0.2843073282 |
| GSE28863_A4 | Down | -0.2235172777 |
| GSE48662 | Down | -0.0841550265 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-32-5p | MIMAT0000090 | MIRT028302 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT048224 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050546 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
