HCSGD entry for SALL4
1. General information
| Official gene symbol | SALL4 |
|---|---|
| Entrez ID | 57167 |
| Gene full name | sal-like 4 (Drosophila) |
| Other gene symbols | DRRS HSAL4 ZNF797 dJ1112F19.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0000792 | Heterochromatin | IEA | cellular_component |
| GO:0001833 | Inner cell mass cell proliferation | IEA | biological_process |
| GO:0001843 | Neural tube closure | IEA | biological_process |
| GO:0003281 | Ventricular septum development | IEA | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0019827 | Stem cell maintenance | IEA | biological_process |
| GO:0030326 | Embryonic limb morphogenesis | IEA | biological_process |
| GO:0043234 | Protein complex | IEA | cellular_component |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4075141484 | 0.7684892253 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1369857333 |
| GSE13712_SHEAR | Up | 0.2503886844 |
| GSE13712_STATIC | Down | -0.0423226070 |
| GSE19018 | Down | -0.0345265634 |
| GSE19899_A1 | Down | -0.0670166317 |
| GSE19899_A2 | Up | 0.2292127348 |
| PubMed_21979375_A1 | Down | -0.2474616865 |
| PubMed_21979375_A2 | Up | 0.1055575837 |
| GSE35957 | Up | 0.4808631490 |
| GSE36640 | Up | 0.0775244701 |
| GSE54402 | Down | -0.0165801160 |
| GSE9593 | Up | 0.1207080739 |
| GSE43922 | Up | 0.2449175098 |
| GSE24585 | Down | -0.0088988173 |
| GSE37065 | Down | -0.2294990516 |
| GSE28863_A1 | Down | -0.0111717526 |
| GSE28863_A2 | Down | -0.0844386113 |
| GSE28863_A3 | Up | 0.1643535021 |
| GSE28863_A4 | Down | -0.0245668879 |
| GSE48662 | Down | -0.1280912814 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016935 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
