HCSGD entry for LHX9
1. General information
| Official gene symbol | LHX9 |
|---|---|
| Entrez ID | 56956 |
| Gene full name | LIM homeobox 9 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0003714 | Transcription corepressor activity | ISS | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0008045 | Motor neuron axon guidance | ISS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008283 | Cell proliferation | IEA | biological_process |
| GO:0008584 | Male gonad development | IEA | biological_process |
| GO:0008585 | Female gonad development | IEA | biological_process |
| GO:0035262 | Gonad morphogenesis | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0045892 | Negative regulation of transcription, DNA-templated | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3839375670 | 0.0638165609 | 0.9999902473 | 0.4762448823 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1056476259 |
| GSE13712_SHEAR | Down | -0.0814579164 |
| GSE13712_STATIC | Up | 0.0617572996 |
| GSE19018 | Up | 0.1810649893 |
| GSE19899_A1 | Down | -0.0062191662 |
| GSE19899_A2 | Up | 0.0534561024 |
| PubMed_21979375_A1 | Up | 0.1127893025 |
| PubMed_21979375_A2 | Down | -0.0873227536 |
| GSE35957 | Up | 0.2313417279 |
| GSE36640 | Up | 0.1048275027 |
| GSE54402 | Down | -0.0487038833 |
| GSE9593 | Down | -0.0649569775 |
| GSE43922 | Up | 0.0132820469 |
| GSE24585 | Up | 0.7633750546 |
| GSE37065 | Down | -0.1495003882 |
| GSE28863_A1 | Down | -0.5383112269 |
| GSE28863_A2 | Up | 0.4315920618 |
| GSE28863_A3 | Down | -4.0759999318 |
| GSE28863_A4 | Up | 0.2083844353 |
| GSE48662 | Up | 0.1851394384 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016753 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
