HCSGD entry for NDNL2
1. General information
| Official gene symbol | NDNL2 |
|---|---|
| Entrez ID | 56160 |
| Gene full name | necdin-like 2 |
| Other gene symbols | HCA4 MAGEG1 MAGEL3 NSE3 NSMCE3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000781 | Chromosome, telomeric region | IEA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006281 | DNA repair | IEA | biological_process |
| GO:0006310 | DNA recombination | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0030915 | Smc5-Smc6 complex | IDA | cellular_component |
| GO:0031398 | Positive regulation of protein ubiquitination | IDA | biological_process |
| GO:0040008 | Regulation of growth | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9553195737 | 0.1486485126 | 0.9999902473 | 0.7457263529 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0650100938 |
| GSE13712_SHEAR | Down | -0.3875842831 |
| GSE13712_STATIC | Down | -0.3052542934 |
| GSE19018 | Down | -0.1087864234 |
| GSE19899_A1 | Down | -0.2342372038 |
| GSE19899_A2 | Up | 0.1756699381 |
| PubMed_21979375_A1 | Down | -0.1471456111 |
| PubMed_21979375_A2 | Down | -0.0659426283 |
| GSE35957 | Down | -0.0617008666 |
| GSE36640 | Up | 0.1775231327 |
| GSE54402 | Down | -0.2186398365 |
| GSE9593 | Up | 0.2671874820 |
| GSE43922 | Down | -0.0125147991 |
| GSE24585 | Up | 0.1009854120 |
| GSE37065 | Up | 0.0170946522 |
| GSE28863_A1 | Down | -0.1640362021 |
| GSE28863_A2 | Down | -0.2609243235 |
| GSE28863_A3 | Down | -0.1226282465 |
| GSE28863_A4 | Up | 0.0720698941 |
| GSE48662 | Down | -0.3223864811 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047835 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050199 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
