HCSGD entry for IFT122
1. General information
| Official gene symbol | IFT122 |
|---|---|
| Entrez ID | 55764 |
| Gene full name | intraflagellar transport 122 homolog (Chlamydomonas) |
| Other gene symbols | CED CED1 SPG WDR10 WDR10p WDR140 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001843 | Neural tube closure | IEA ISS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0010172 | Embryonic body morphogenesis | IEA ISS | biological_process |
| GO:0030991 | Intraciliary transport particle A | IDA | cellular_component |
| GO:0032391 | Photoreceptor connecting cilium | IEA ISS | cellular_component |
| GO:0035050 | Embryonic heart tube development | IEA ISS | biological_process |
| GO:0035721 | Intraciliary retrograde transport | IEA ISS | biological_process |
| GO:0042733 | Embryonic digit morphogenesis | IEA | biological_process |
| GO:0045879 | Negative regulation of smoothened signaling pathway | IEA ISS | biological_process |
| GO:0048593 | Camera-type eye morphogenesis | IEA ISS | biological_process |
| GO:0060173 | Limb development | ISS | biological_process |
| GO:0060271 | Cilium morphogenesis | IEA ISS | biological_process |
| GO:0060830 | Ciliary receptor clustering involved in smoothened signaling pathway | IEA | biological_process |
| GO:0060831 | Smoothened signaling pathway involved in dorsal/ventral neural tube patterning | IEA | biological_process |
| GO:0072372 | Primary cilium | ISS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8065257627 | 0.3774990160 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0409044059 |
| GSE13712_SHEAR | Down | -0.2007503325 |
| GSE13712_STATIC | Down | -0.2057867032 |
| GSE19018 | Down | -0.0594409941 |
| GSE19899_A1 | Down | -0.0230655181 |
| GSE19899_A2 | Down | -0.1855792238 |
| PubMed_21979375_A1 | Up | 0.2775927722 |
| PubMed_21979375_A2 | Up | 0.1133268703 |
| GSE35957 | Up | 0.0323357377 |
| GSE36640 | Down | -0.0094691642 |
| GSE54402 | Down | -0.0119232632 |
| GSE9593 | Down | -0.1876749498 |
| GSE43922 | Down | -0.1328426301 |
| GSE24585 | Up | 0.3699155398 |
| GSE37065 | Down | -0.2079262564 |
| GSE28863_A1 | Down | -0.0416566822 |
| GSE28863_A2 | Up | 0.0589706086 |
| GSE28863_A3 | Up | 0.1323536845 |
| GSE28863_A4 | Down | -0.0534945285 |
| GSE48662 | Up | 0.2434885196 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018545 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
