HCSGD entry for NDC1
1. General information
| Official gene symbol | NDC1 |
|---|---|
| Entrez ID | 55706 |
| Gene full name | NDC1 transmembrane nucleoporin |
| Other gene symbols | NET3 TMEM48 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005643 | Nuclear pore | IDA | cellular_component |
| GO:0015031 | Protein transport | NAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0017056 | Structural constituent of nuclear pore | IMP | molecular_function |
| GO:0031081 | Nuclear pore distribution | IMP | biological_process |
| GO:0031965 | Nuclear membrane | IEA | cellular_component |
| GO:0051028 | MRNA transport | IEA | biological_process |
| GO:0051292 | Nuclear pore complex assembly | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9522941454 | 0.0029414764 | 0.9999902473 | 0.1081321229 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0192362234 |
| GSE13712_SHEAR | Up | 0.0653429985 |
| GSE13712_STATIC | Up | 0.0058825651 |
| GSE19018 | Down | -0.4317296331 |
| GSE19899_A1 | Down | -0.7523555571 |
| GSE19899_A2 | Down | -1.0730017281 |
| PubMed_21979375_A1 | Up | 0.3223528639 |
| PubMed_21979375_A2 | Down | -0.9805605728 |
| GSE35957 | Down | -1.4302938534 |
| GSE36640 | Down | -2.1613809415 |
| GSE54402 | Down | -0.5799562994 |
| GSE9593 | Down | -0.5583444499 |
| GSE43922 | Down | -0.3220322359 |
| GSE24585 | Down | -0.1920590785 |
| GSE37065 | Down | -0.1286294659 |
| GSE28863_A1 | Down | -0.2882507164 |
| GSE28863_A2 | Up | 0.9371580074 |
| GSE28863_A3 | Down | -0.8366579707 |
| GSE28863_A4 | Up | 0.0137746292 |
| GSE48662 | Down | -0.1958653417 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-421 | MIMAT0003339 | MIRT016119 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025692 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-125b-5p | MIMAT0000423 | MIRT046006 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046793 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-181b-5p | MIMAT0000257 | MIRT047234 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
