HCSGD entry for POMGNT1
1. General information
| Official gene symbol | POMGNT1 |
|---|---|
| Entrez ID | 55624 |
| Gene full name | protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase |
| Other gene symbols | GNTI.2 GnT I.2 LGMD2O MDDGA3 MDDGB3 MDDGC3 MEB MGAT1.2 gnT-I.2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0006486 | Protein glycosylation | IEA | biological_process |
| GO:0006493 | Protein O-linked glycosylation | IDA IEA | biological_process |
| GO:0008375 | Acetylglucosaminyltransferase activity | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0047223 | Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity | IDA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2960788724 | 0.4990308423 | 0.9952172903 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0757342457 |
| GSE13712_SHEAR | Up | 0.1644766820 |
| GSE13712_STATIC | Up | 0.0068128790 |
| GSE19018 | Up | 0.2996134915 |
| GSE19899_A1 | Down | -0.1507982681 |
| GSE19899_A2 | Up | 0.3088213018 |
| PubMed_21979375_A1 | Up | 0.3875546857 |
| PubMed_21979375_A2 | Down | -0.1134735100 |
| GSE35957 | Up | 0.0870074816 |
| GSE36640 | Up | 0.6121762265 |
| GSE54402 | Up | 0.0257177683 |
| GSE9593 | Up | 0.3631303901 |
| GSE43922 | Up | 0.0422603141 |
| GSE24585 | Down | -0.1226316325 |
| GSE37065 | Down | -0.0418420435 |
| GSE28863_A1 | Down | -0.3534191843 |
| GSE28863_A2 | Up | 0.1639927605 |
| GSE28863_A3 | Down | -0.5679315281 |
| GSE28863_A4 | Down | -0.3163174239 |
| GSE48662 | Up | 0.2865946442 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-744-5p | MIMAT0004945 | MIRT037663 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-330-5p | MIMAT0004693 | MIRT038246 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-3p | MIMAT0004509 | MIRT038869 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046794 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT048358 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049784 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
