HCSGD entry for CHST12
1. General information
| Official gene symbol | CHST12 |
|---|---|
| Entrez ID | 55501 |
| Gene full name | carbohydrate (chondroitin 4) sulfotransferase 12 |
| Other gene symbols | C4S-2 C4ST-2 C4ST2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0008146 | Sulfotransferase activity | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016051 | Carbohydrate biosynthetic process | IEA | biological_process |
| GO:0030173 | Integral component of Golgi membrane | NAS | cellular_component |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0030206 | Chondroitin sulfate biosynthetic process | IDA TAS | biological_process |
| GO:0030208 | Dermatan sulfate biosynthetic process | IDA | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0047756 | Chondroitin 4-sulfotransferase activity | IDA | molecular_function |
| GO:0050656 | 3'-phosphoadenosine 5'-phosphosulfate binding | NAS | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4563411724 | 0.4244269899 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1445241367 |
| GSE13712_SHEAR | Down | -0.5640917510 |
| GSE13712_STATIC | Down | -0.0953880557 |
| GSE19018 | Down | -0.0448970476 |
| GSE19899_A1 | Down | -0.2967105045 |
| GSE19899_A2 | Up | 0.4509028347 |
| PubMed_21979375_A1 | Down | -0.4467960686 |
| PubMed_21979375_A2 | Up | 0.2575733370 |
| GSE35957 | Down | -0.0910400350 |
| GSE36640 | Up | 0.5638287995 |
| GSE54402 | Up | 0.0547585760 |
| GSE9593 | Up | 0.2456505020 |
| GSE43922 | Up | 0.0196038660 |
| GSE24585 | Up | 0.1585542798 |
| GSE37065 | Down | -0.0440375054 |
| GSE28863_A1 | Down | -0.0699445454 |
| GSE28863_A2 | Down | -0.1253450072 |
| GSE28863_A3 | Down | -0.2308358028 |
| GSE28863_A4 | Down | -0.0634251130 |
| GSE48662 | Up | 0.4038091137 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-122-5p | MIMAT0000421 | MIRT023383 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024916 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026953 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030347 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
