HCSGD entry for LAPTM4B
1. General information
| Official gene symbol | LAPTM4B |
|---|---|
| Entrez ID | 55353 |
| Gene full name | lysosomal protein transmembrane 4 beta |
| Other gene symbols | LAPTM4beta LC27 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006810 | Transport | IEA | biological_process |
| GO:0012505 | Endomembrane system | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1087506326 | 0.1374222940 | 0.6834853327 | 0.7143347938 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.7023751042 |
| GSE13712_SHEAR | Down | -1.2576873451 |
| GSE13712_STATIC | Down | -1.4818915156 |
| GSE19018 | Up | 0.4234719444 |
| GSE19899_A1 | Down | -0.2842411153 |
| GSE19899_A2 | Up | 0.4147109536 |
| PubMed_21979375_A1 | Down | -0.1199588980 |
| PubMed_21979375_A2 | Down | -0.0249031888 |
| GSE35957 | Down | -0.4661180247 |
| GSE36640 | Up | 0.0962806779 |
| GSE54402 | Up | 0.4037204138 |
| GSE9593 | Down | -0.0887704429 |
| GSE43922 | Up | 0.1163858762 |
| GSE24585 | Down | -0.1609475375 |
| GSE37065 | Up | 0.0951777309 |
| GSE28863_A1 | Up | 0.6707367493 |
| GSE28863_A2 | Up | 0.8437688192 |
| GSE28863_A3 | Up | 0.1092888910 |
| GSE28863_A4 | Down | -0.3177404835 |
| GSE48662 | Down | -0.4866688984 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-183-5p | MIMAT0000261 | MIRT024999 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028065 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030456 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-27b-3p | MIMAT0000419 | MIRT046220 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051281 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
