HCSGD entry for LSG1
1. General information
| Official gene symbol | LSG1 |
|---|---|
| Entrez ID | 55341 |
| Gene full name | large subunit GTPase 1 homolog (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003924 | GTPase activity | IBA IDA | molecular_function |
| GO:0005525 | GTP binding | IDA IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005829 | Cytosol | IBA | cellular_component |
| GO:0006184 | GTP catabolic process | IBA IDA | biological_process |
| GO:0008152 | Metabolic process | IBA IDA | biological_process |
| GO:0015030 | Cajal body | IDA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0042254 | Ribosome biogenesis | IBA | biological_process |
| GO:0051168 | Nuclear export | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0070083280 | 0.7771332358 | 0.2185618483 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.7483302597 |
| GSE13712_SHEAR | Up | 0.1330376559 |
| GSE13712_STATIC | Down | -0.1194587237 |
| GSE19018 | Down | -0.9842914996 |
| GSE19899_A1 | Up | 0.5393724804 |
| GSE19899_A2 | Up | 1.0650374677 |
| PubMed_21979375_A1 | Up | 2.0712539479 |
| PubMed_21979375_A2 | Up | 1.6678678506 |
| GSE35957 | Down | -0.5260358714 |
| GSE36640 | Down | -0.0333594197 |
| GSE54402 | Up | 0.6061840244 |
| GSE9593 | Down | -0.1252966004 |
| GSE43922 | Up | 0.6609574090 |
| GSE24585 | Down | -0.2119571155 |
| GSE37065 | Up | 0.2186885545 |
| GSE28863_A1 | Up | 0.4067959000 |
| GSE28863_A2 | Up | 0.6204457177 |
| GSE28863_A3 | Down | -0.0982231088 |
| GSE28863_A4 | Down | -0.1829565716 |
| GSE48662 | Down | -0.1889355683 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031960 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032473 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
