HCSGD entry for PEF1
1. General information
| Official gene symbol | PEF1 |
|---|---|
| Entrez ID | 553115 |
| Gene full name | penta-EF-hand domain containing 1 |
| Other gene symbols | ABP32 PEF1A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0046982 | Protein heterodimerization activity | IPI | molecular_function |
| GO:0046983 | Protein dimerization activity | IPI | molecular_function |
| GO:0051592 | Response to calcium ion | IPI | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4964701683 | 0.3785061852 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3803911265 |
| GSE13712_SHEAR | Down | -0.0652261317 |
| GSE13712_STATIC | Down | -0.1710993951 |
| GSE19018 | Down | -0.0447265863 |
| GSE19899_A1 | Down | -0.3361740657 |
| GSE19899_A2 | Up | 0.4389497748 |
| PubMed_21979375_A1 | Up | 0.5358023164 |
| PubMed_21979375_A2 | Up | 0.8015555364 |
| GSE35957 | Up | 0.0447930342 |
| GSE36640 | Up | 0.2468520901 |
| GSE54402 | Down | -0.0383823978 |
| GSE9593 | Down | -0.2588010438 |
| GSE43922 | Down | -0.0014274524 |
| GSE24585 | Down | -0.3663906911 |
| GSE37065 | Up | 0.0499762731 |
| GSE28863_A1 | Up | 0.0591788449 |
| GSE28863_A2 | Down | -0.0671595895 |
| GSE28863_A3 | Down | -0.2583015837 |
| GSE28863_A4 | Down | -0.1769896584 |
| GSE48662 | Up | 0.0942609358 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1301-3p | MIMAT0005797 | MIRT036056 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-760 | MIMAT0004957 | MIRT036731 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040231 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041409 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
