HCSGD entry for VPS13D
1. General information
| Official gene symbol | VPS13D |
|---|---|
| Entrez ID | 55187 |
| Gene full name | vacuolar protein sorting 13 homolog D (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
Not in the Gene Ontology4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0774066943 | 0.5686138900 | 0.5869840392 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1226932155 |
| GSE13712_SHEAR | Up | 0.2803417517 |
| GSE13712_STATIC | Up | 0.3127720168 |
| GSE19018 | Up | 0.0156720688 |
| GSE19899_A1 | Up | 0.0386779618 |
| GSE19899_A2 | Down | -0.0351475845 |
| PubMed_21979375_A1 | Up | 0.0535796639 |
| PubMed_21979375_A2 | Up | 0.1436911336 |
| GSE35957 | Up | 0.3492166323 |
| GSE36640 | Up | 0.1811732231 |
| GSE54402 | Up | 0.0358771165 |
| GSE9593 | Up | 0.0112840421 |
| GSE43922 | Up | 0.0330397811 |
| GSE24585 | Down | -0.1948962314 |
| GSE37065 | Up | 0.0012969461 |
| GSE28863_A1 | Up | 1.3879049267 |
| GSE28863_A2 | Up | 1.4054331944 |
| GSE28863_A3 | Down | -0.6034169397 |
| GSE28863_A4 | Down | -0.4460585361 |
| GSE48662 | Up | 0.0807765303 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-132-3p | MIMAT0000426 | MIRT021825 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT022025 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025941 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-342-5p | MIMAT0004694 | MIRT038209 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-3p | MIMAT0004555 | MIRT038671 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051432 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
