HCSGD entry for C17orf80
1. General information
| Official gene symbol | C17orf80 |
|---|---|
| Entrez ID | 55028 |
| Gene full name | chromosome 17 open reading frame 80 |
| Other gene symbols | HLC-8 MIG3 SPEP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8067657270 | 0.1202291516 | 0.9999902473 | 0.6660189394 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0039547226 |
| GSE13712_SHEAR | Up | 0.2957933318 |
| GSE13712_STATIC | Up | 0.5222331170 |
| GSE19018 | Down | -0.0832552801 |
| GSE19899_A1 | Down | -0.2416978680 |
| GSE19899_A2 | Down | -0.3770141409 |
| PubMed_21979375_A1 | Down | -0.4920441446 |
| PubMed_21979375_A2 | Down | -0.6165589677 |
| GSE35957 | Down | -0.2918881128 |
| GSE36640 | Down | -0.1791730283 |
| GSE54402 | Down | -0.3269918606 |
| GSE9593 | Down | -0.0592163375 |
| GSE43922 | Down | -0.1252310461 |
| GSE24585 | Up | 0.3735428073 |
| GSE37065 | Up | 0.1079595751 |
| GSE28863_A1 | Up | 0.1035191629 |
| GSE28863_A2 | Down | -0.0407408326 |
| GSE28863_A3 | Down | -0.3250599091 |
| GSE28863_A4 | Up | 0.0949689650 |
| GSE48662 | Down | -0.2514805323 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-15a-5p | MIMAT0000068 | MIRT003881 | Microarray | Functional MTI (Weak) | 18362358 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT004375 | Microarray | Functional MTI (Weak) | 18362358 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020493 | Reporter assay;Other | Non-Functional MTI | 20584899 |
| hsa-miR-125a-5p | MIMAT0000443 | MIRT045779 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-125b-5p | MIMAT0000423 | MIRT046098 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-15a-5p | MIMAT0000068 | NA | hsa-miR-15a | 18362358 | |||
| hsa-miR-16-5p | MIMAT0000069 | NA | hsa-miR-16 | 18362358 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
