HCSGD entry for SSH3
1. General information
| Official gene symbol | SSH3 |
|---|---|
| Entrez ID | 54961 |
| Gene full name | slingshot protein phosphatase 3 |
| Other gene symbols | SSH3L |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003779 | Actin binding | IBA | molecular_function |
| GO:0004725 | Protein tyrosine phosphatase activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IBA | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0006470 | Protein dephosphorylation | IBA | biological_process |
| GO:0008064 | Regulation of actin polymerization or depolymerization | IBA | biological_process |
| GO:0008138 | Protein tyrosine/serine/threonine phosphatase activity | IBA IEA | molecular_function |
| GO:0010591 | Regulation of lamellipodium assembly | IBA | biological_process |
| GO:0050770 | Regulation of axonogenesis | IBA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8761776794 | 0.0849661829 | 0.9999902473 | 0.5530155539 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1348768810 |
| GSE13712_SHEAR | Down | -0.2462490272 |
| GSE13712_STATIC | Down | -0.0753975171 |
| GSE19018 | Up | 0.0291505472 |
| GSE19899_A1 | Down | -0.3597864373 |
| GSE19899_A2 | Down | -0.2560365356 |
| PubMed_21979375_A1 | Down | -0.7286966574 |
| PubMed_21979375_A2 | Down | -0.3593535718 |
| GSE35957 | Up | 0.5156091353 |
| GSE36640 | Up | 0.5111648268 |
| GSE54402 | Down | -0.4295830457 |
| GSE9593 | Up | 0.2434711649 |
| GSE43922 | Down | -0.6205423823 |
| GSE24585 | Up | 0.0370914474 |
| GSE37065 | Down | -0.0695893889 |
| GSE28863_A1 | Up | 0.1253777972 |
| GSE28863_A2 | Down | -0.2058540996 |
| GSE28863_A3 | Down | -0.0224124219 |
| GSE28863_A4 | Down | -0.1766015888 |
| GSE48662 | Up | 0.3979340852 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-346 | MIMAT0000773 | MIRT004229 | Microarray | Functional MTI (Weak) | 16822819 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
