HCSGD entry for ZCCHC2
1. General information
| Official gene symbol | ZCCHC2 |
|---|---|
| Entrez ID | 54877 |
| Gene full name | zinc finger, CCHC domain containing 2 |
| Other gene symbols | C18orf49 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0035091 | Phosphatidylinositol binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0603874055 | 0.9801891190 | 0.5323030476 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1195643562 |
| GSE13712_SHEAR | Up | 0.4669720039 |
| GSE13712_STATIC | Up | 0.1239188164 |
| GSE19018 | Down | -0.1074493768 |
| GSE19899_A1 | Up | 0.0330261525 |
| GSE19899_A2 | Up | 0.3698672351 |
| PubMed_21979375_A1 | Up | 1.0363437996 |
| PubMed_21979375_A2 | Up | 0.5439091329 |
| GSE35957 | Down | -0.2044862281 |
| GSE36640 | Up | 0.1094379677 |
| GSE54402 | Up | 0.1030489583 |
| GSE9593 | Down | -0.0206682279 |
| GSE43922 | Up | 0.1712931698 |
| GSE24585 | Up | 0.1612042151 |
| GSE37065 | Up | 0.5394993583 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.2894426904 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019313 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-340-5p | MIMAT0004692 | MIRT019561 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-122-5p | MIMAT0000421 | MIRT023376 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-101-3p | MIMAT0000099 | MIRT027311 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049329 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
