HCSGD entry for BEST2
1. General information
| Official gene symbol | BEST2 |
|---|---|
| Entrez ID | 54831 |
| Gene full name | bestrophin 2 |
| Other gene symbols | VMD2L1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005254 | Chloride channel activity | ISS | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0005929 | Cilium | ISS | cellular_component |
| GO:0007608 | Sensory perception of smell | ISS | biological_process |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0034220 | Ion transmembrane transport | ISS | biological_process |
| GO:0034707 | Chloride channel complex | IEA | cellular_component |
| GO:0051899 | Membrane depolarization | ISS | biological_process |
| GO:0055085 | Transmembrane transport | ISS | biological_process |
| GO:1902476 | Chloride transmembrane transport | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8305980510 | 0.4281136469 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1696881085 |
| GSE13712_SHEAR | Down | -0.0884595782 |
| GSE13712_STATIC | Down | -0.0220393973 |
| GSE19018 | Up | 0.0225432988 |
| GSE19899_A1 | Down | -0.1093537580 |
| GSE19899_A2 | Up | 0.0377534429 |
| PubMed_21979375_A1 | Down | -0.2433947000 |
| PubMed_21979375_A2 | Down | -0.0787499483 |
| GSE35957 | Up | 0.1288171614 |
| GSE36640 | Down | -0.0191858885 |
| GSE54402 | Down | -0.1298313653 |
| GSE9593 | Up | 0.0384766013 |
| GSE43922 | Up | 0.0168543487 |
| GSE24585 | Down | -0.0021352584 |
| GSE37065 | Down | -0.1311037932 |
| GSE28863_A1 | Down | -0.2968148624 |
| GSE28863_A2 | Down | -0.0831432815 |
| GSE28863_A3 | Up | 0.3461556711 |
| GSE28863_A4 | Up | 0.2012300820 |
| GSE48662 | Up | 0.3299947551 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
