HCSGD entry for PPEF1
1. General information
| Official gene symbol | PPEF1 |
|---|---|
| Entrez ID | 5475 |
| Gene full name | protein phosphatase, EF-hand calcium binding domain 1 |
| Other gene symbols | PP7 PPEF PPP7C PPP7CA |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004721 | Phosphoprotein phosphatase activity | IEA | molecular_function |
| GO:0004722 | Protein serine/threonine phosphatase activity | TAS | molecular_function |
| GO:0005506 | Iron ion binding | IEA | molecular_function |
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006470 | Protein dephosphorylation | TAS | biological_process |
| GO:0007603 | Phototransduction, visible light | TAS | biological_process |
| GO:0016056 | Rhodopsin mediated signaling pathway | TAS | biological_process |
| GO:0022400 | Regulation of rhodopsin mediated signaling pathway | TAS | biological_process |
| GO:0030145 | Manganese ion binding | IEA | molecular_function |
| GO:0050906 | Detection of stimulus involved in sensory perception | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7019684207 | 0.4646238555 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0431756993 |
| GSE13712_SHEAR | Up | 0.0609506918 |
| GSE13712_STATIC | Down | -0.1438888386 |
| GSE19018 | Down | -0.0718178950 |
| GSE19899_A1 | Up | 0.2480873491 |
| GSE19899_A2 | Up | 0.0619850709 |
| PubMed_21979375_A1 | Down | -0.2228369822 |
| PubMed_21979375_A2 | Down | -0.3379270135 |
| GSE35957 | Up | 0.3849172273 |
| GSE36640 | Down | -0.1693412444 |
| GSE54402 | Up | 0.0745748743 |
| GSE9593 | Up | 0.2693330472 |
| GSE43922 | Up | 0.0118004408 |
| GSE24585 | Down | -0.6351806787 |
| GSE37065 | Up | 0.0067544129 |
| GSE28863_A1 | Up | 0.0316361637 |
| GSE28863_A2 | Up | 0.0391010264 |
| GSE28863_A3 | Up | 0.1080962726 |
| GSE28863_A4 | Up | 0.0503581811 |
| GSE48662 | Down | -0.0426726247 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
