HCSGD entry for EPDR1
1. General information
| Official gene symbol | EPDR1 |
|---|---|
| Entrez ID | 54749 |
| Gene full name | ependymin related protein 1 (zebrafish) |
| Other gene symbols | EPDR MERP-1 MERP1 UCC1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005764 | Lysosome | IEA | cellular_component |
| GO:0007160 | Cell-matrix adhesion | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1907654116 | 0.0328195661 | 0.8481649324 | 0.3419809184 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0053774993 |
| GSE13712_SHEAR | Down | -0.4533109911 |
| GSE13712_STATIC | Down | -0.4367069066 |
| GSE19018 | Down | -0.2501248420 |
| GSE19899_A1 | Up | 0.1845066026 |
| GSE19899_A2 | Up | 0.1278801448 |
| PubMed_21979375_A1 | Up | 0.3094532342 |
| PubMed_21979375_A2 | Up | 0.1853487042 |
| GSE35957 | Up | 0.9659637916 |
| GSE36640 | Down | -0.4646078476 |
| GSE54402 | Down | -0.2089021901 |
| GSE9593 | Up | 0.9648950800 |
| GSE43922 | Up | 0.0801277904 |
| GSE24585 | Up | 0.0941579979 |
| GSE37065 | Up | 0.3032381713 |
| GSE28863_A1 | Down | -1.0050484736 |
| GSE28863_A2 | Up | 0.6617450620 |
| GSE28863_A3 | Down | -1.1333322951 |
| GSE28863_A4 | Down | -0.4811343564 |
| GSE48662 | Up | 0.2559704833 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016452 | Microarray | Functional MTI (Weak) | 20304954 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022804 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024408 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026718 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040027 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
