HCSGD entry for RC3H2
1. General information
| Official gene symbol | RC3H2 |
|---|---|
| Entrez ID | 54542 |
| Gene full name | ring finger and CCCH-type domains 2 |
| Other gene symbols | MNAB RNF164 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000932 | Cytoplasmic mRNA processing body | IEA | cellular_component |
| GO:0003677 | DNA binding | IDA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0009986 | Cell surface | IDA | cellular_component |
| GO:0016020 | Membrane | IDA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0549882717 | 0.9502338475 | 0.5116105691 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0167191339 |
| GSE13712_SHEAR | Down | -0.1616798533 |
| GSE13712_STATIC | Down | -0.3350461782 |
| GSE19018 | Down | -0.1078123610 |
| GSE19899_A1 | Up | 0.3389447161 |
| GSE19899_A2 | Up | 0.4505619155 |
| PubMed_21979375_A1 | Up | 0.7226134384 |
| PubMed_21979375_A2 | Up | 0.2702726760 |
| GSE35957 | Up | 0.1866232055 |
| GSE36640 | Up | 0.4929626609 |
| GSE54402 | Up | 0.3116146793 |
| GSE9593 | Down | -0.0230453608 |
| GSE43922 | Up | 0.5092411503 |
| GSE24585 | Down | -0.0384313332 |
| GSE37065 | Up | 0.0348897916 |
| GSE28863_A1 | Up | 0.4584484303 |
| GSE28863_A2 | Up | 0.2363386999 |
| GSE28863_A3 | Down | -0.3732979277 |
| GSE28863_A4 | Up | 0.0072177401 |
| GSE48662 | Up | 0.1197563784 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT042099 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-183-5p | MIMAT0000261 | MIRT047142 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
