HCSGD entry for RBM47
1. General information
| Official gene symbol | RBM47 |
|---|---|
| Entrez ID | 54502 |
| Gene full name | RNA binding motif protein 47 |
| Other gene symbols | NET18 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2742391361 | 0.9536004331 | 0.9705544404 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1679640728 |
| GSE13712_SHEAR | Down | -0.0216322606 |
| GSE13712_STATIC | Up | 0.1108132810 |
| GSE19018 | Up | 0.0034316367 |
| GSE19899_A1 | Up | 0.0379475774 |
| GSE19899_A2 | Up | 0.0394061264 |
| PubMed_21979375_A1 | Up | 0.0917749251 |
| PubMed_21979375_A2 | Up | 0.0690491916 |
| GSE35957 | Down | -0.0016554096 |
| GSE36640 | Up | 0.0407040138 |
| GSE54402 | Up | 0.3224733935 |
| GSE9593 | Up | 0.2107570893 |
| GSE43922 | Up | 0.0381000326 |
| GSE24585 | Up | 0.3646981496 |
| GSE37065 | Up | 0.4718742830 |
| GSE28863_A1 | Up | 0.0284979431 |
| GSE28863_A2 | Down | -0.1817682220 |
| GSE28863_A3 | Up | 0.0431538394 |
| GSE28863_A4 | Up | 0.1010796557 |
| GSE48662 | Down | -0.1517200683 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT003847 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-1 | MIMAT0000416 | MIRT003847 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT004903 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT004903 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT017607 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
