HCSGD entry for TMCO1

1. General information

Official gene symbolTMCO1
Entrez ID54499
Gene full nametransmembrane and coiled-coil domains 1
Other gene symbolsHP10122 PCIA3 PNAS-136 RP11-466F5.7 TMCC4
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000139Golgi membraneIEAcellular_component
GO:0005789Endoplasmic reticulum membraneIEAcellular_component
GO:0016020MembraneIEAcellular_component
GO:0016021Integral component of membraneIEAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.06202743060.88145322370.53912191831.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.4881390007
GSE13712_SHEARUp0.0446984303
GSE13712_STATICUp0.1160226034
GSE19018Up0.0190358118
GSE19899_A1Up0.2982502967
GSE19899_A2Up0.3584539807
PubMed_21979375_A1Up0.3532237857
PubMed_21979375_A2Up0.4443758252
GSE35957Up0.2243588881
GSE36640Up0.8661834534
GSE54402Down-0.0548911871
GSE9593Up0.0827767135
GSE43922Up0.3428929634
GSE24585Up0.2695384679
GSE37065Down-0.0614247769
GSE28863_A1Down-0.1095619441
GSE28863_A2Up0.3392537334
GSE28863_A3Down-0.3622594851
GSE28863_A4Down-0.2404397169
GSE48662Down-0.4443940474

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-30a-5pMIMAT0000087MIRT005185pSILAC//Proteomics;OtherFunctional MTI (Weak)18668040
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.