HCSGD entry for TRMT13


1. General information

Official gene symbolTRMT13
Entrez ID54482
Gene full nametRNA methyltransferase 13 homolog (S. cerevisiae)
Other gene symbolsCCDC76
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0008033TRNA processingIEAbiological_process
GO:0008168Methyltransferase activityIEAmolecular_function
GO:0046872Metal ion bindingIEAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.98871039090.00901424720.99999024730.1878893903

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0013668294
GSE13712_SHEARUp0.1231823402
GSE13712_STATICUp0.1856692660
GSE19018Down-0.7330307690
GSE19899_A1Down-0.0198821063
GSE19899_A2Down-0.6751434669
PubMed_21979375_A1Down-0.4227429224
PubMed_21979375_A2Down-0.4317357665
GSE35957Down-0.6997160219
GSE36640Down-0.2498291378
GSE54402Down-0.2988767512
GSE9593Down-0.4200105892
GSE43922Down-0.0373417246
GSE24585Down-0.3540571977
GSE37065Down-0.2139645485
GSE28863_A1Down-0.2204629236
GSE28863_A2Down-0.3489531013
GSE28863_A3Down-0.6669080734
GSE28863_A4Down-0.2322194628
GSE48662Down-0.0675328967

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-7-5pMIMAT0000252MIRT025862MicroarrayFunctional MTI (Weak)17612493
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    • mirRecord

MicroRNA name

mirBase ID

Target site number

MiRNA mature ID

Test method inter

MiRNA regulation site

Reporter target site

Pubmed ID

hsa-miR-15a-5pMIMAT0000068NAhsa-miR-15a18362358
hsa-miR-16-5pMIMAT0000069NAhsa-miR-1618362358
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6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.