HCSGD entry for SLC38A2
1. General information
| Official gene symbol | SLC38A2 |
|---|---|
| Entrez ID | 54407 |
| Gene full name | solute carrier family 38, member 2 |
| Other gene symbols | ATA2 PRO1068 SAT2 SNAT2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0006811 | Ion transport | TAS | biological_process |
| GO:0006814 | Sodium ion transport | IEA | biological_process |
| GO:0006865 | Amino acid transport | TAS | biological_process |
| GO:0007268 | Synaptic transmission | TAS | biological_process |
| GO:0007269 | Neurotransmitter secretion | TAS | biological_process |
| GO:0014047 | Glutamate secretion | TAS | biological_process |
| GO:0015171 | Amino acid transmembrane transporter activity | IEA | molecular_function |
| GO:0015293 | Symporter activity | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0055085 | Transmembrane transport | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9690461951 | 0.0242146765 | 0.9999902473 | 0.2993680132 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4584752408 |
| GSE13712_SHEAR | Down | -0.0429643199 |
| GSE13712_STATIC | Down | -0.0909084729 |
| GSE19018 | Down | -0.0862120752 |
| GSE19899_A1 | Down | -0.5697536635 |
| GSE19899_A2 | Down | -0.8896886100 |
| PubMed_21979375_A1 | Down | -0.9706107234 |
| PubMed_21979375_A2 | Down | -0.4953477379 |
| GSE35957 | Up | 0.3822019378 |
| GSE36640 | Up | 0.2415991973 |
| GSE54402 | Down | -0.2847934960 |
| GSE9593 | Down | -0.0763711581 |
| GSE43922 | Down | -0.2959975777 |
| GSE24585 | Up | 0.3280646765 |
| GSE37065 | Down | -0.1574435697 |
| GSE28863_A1 | Down | -0.1377963645 |
| GSE28863_A2 | Down | -0.1867760444 |
| GSE28863_A3 | Down | -0.3030567562 |
| GSE28863_A4 | Up | 0.1360318909 |
| GSE48662 | Down | -0.2469386083 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT005160 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT017766 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022556 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-101-3p | MIMAT0000099 | MIRT027261 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031686 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032375 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040757 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041222 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051580 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
