HCSGD entry for SRRT
1. General information
| Official gene symbol | SRRT |
|---|---|
| Entrez ID | 51593 |
| Gene full name | serrate RNA effector molecule homolog (Arabidopsis) |
| Other gene symbols | ARS2 ASR2 serrate |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | ISS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005654 | Nucleoplasm | ISS | cellular_component |
| GO:0005737 | Cytoplasm | ISS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | ISS | biological_process |
| GO:0008283 | Cell proliferation | ISS | biological_process |
| GO:0031053 | Primary miRNA processing | IMP | biological_process |
| GO:0046685 | Response to arsenic-containing substance | NAS | biological_process |
| GO:0097150 | Neuronal stem cell maintenance | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6212453212 | 0.3301801983 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0532236407 |
| GSE13712_SHEAR | Up | 0.1141254359 |
| GSE13712_STATIC | Down | -0.0102063905 |
| GSE19018 | Down | -0.6211134265 |
| GSE19899_A1 | Down | -0.2238319309 |
| GSE19899_A2 | Down | -0.0805049944 |
| PubMed_21979375_A1 | Down | -0.0211554642 |
| PubMed_21979375_A2 | Down | -0.1172763568 |
| GSE35957 | Down | -0.2667711060 |
| GSE36640 | Down | -0.7163570998 |
| GSE54402 | Up | 0.3031409178 |
| GSE9593 | Down | -0.2157597731 |
| GSE43922 | Up | 0.0124168668 |
| GSE24585 | Up | 0.0849135710 |
| GSE37065 | Down | -0.1450707134 |
| GSE28863_A1 | Up | 0.2083578472 |
| GSE28863_A2 | Up | 0.3527546547 |
| GSE28863_A3 | Up | 0.4414746448 |
| GSE28863_A4 | Up | 0.0732713486 |
| GSE48662 | Down | -0.0555831743 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-196a-5p | MIMAT0000226 | MIRT026028 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT026028 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030477 | Microarray | Functional MTI (Weak) | 17686970 |
| hsa-miR-1914-5p | MIMAT0007889 | MIRT035793 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30c-1-3p | MIMAT0004674 | MIRT038543 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046768 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049730 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
