HCSGD entry for NIP7
1. General information
| Official gene symbol | NIP7 |
|---|---|
| Entrez ID | 51388 |
| Gene full name | NIP7, nucleolar pre-rRNA processing protein |
| Other gene symbols | HSPC031 KD93 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005730 | Nucleolus | IEA | cellular_component |
| GO:0042255 | Ribosome assembly | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0230751453 | 0.2112585350 | 0.3616227976 | 0.8869892965 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0189846172 |
| GSE13712_SHEAR | Up | 0.5088714997 |
| GSE13712_STATIC | Up | 0.3953378789 |
| GSE19018 | Down | -2.0994501997 |
| GSE19899_A1 | Up | 0.3141409945 |
| GSE19899_A2 | Up | 0.5486661255 |
| PubMed_21979375_A1 | Up | 1.1762469109 |
| PubMed_21979375_A2 | Up | 0.7926706309 |
| GSE35957 | Up | 0.0309397765 |
| GSE36640 | Down | -0.7205959907 |
| GSE54402 | Up | 0.5547749532 |
| GSE9593 | Down | -0.0572928337 |
| GSE43922 | Up | 0.4303669333 |
| GSE24585 | Down | -0.5432233939 |
| GSE37065 | Down | -0.1486559055 |
| GSE28863_A1 | Down | -0.1112309502 |
| GSE28863_A2 | Up | 0.1185724743 |
| GSE28863_A3 | Down | -0.3513975900 |
| GSE28863_A4 | Up | 0.3898382025 |
| GSE48662 | Up | 0.3564878216 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT023066 | Proteomics;Microarray | Non-Functional MTI (Weak) | 18668037 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028652 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030007 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040453 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048591 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
