HCSGD entry for VPS36
1. General information
| Official gene symbol | VPS36 |
|---|---|
| Entrez ID | 51028 |
| Gene full name | vacuolar protein sorting 36 homolog (S. cerevisiae) |
| Other gene symbols | C13orf9 EAP45 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005764 | Lysosome | IEA | cellular_component |
| GO:0005768 | Endosome | IDA | cellular_component |
| GO:0005770 | Late endosome | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0016197 | Endosomal transport | TAS | biological_process |
| GO:0032266 | Phosphatidylinositol-3-phosphate binding | IEA | molecular_function |
| GO:0043130 | Ubiquitin binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7804767752 | 0.2584883211 | 0.9999902473 | 0.9748776472 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1252720872 |
| GSE13712_SHEAR | Down | -0.2655611236 |
| GSE13712_STATIC | Down | -0.0360541764 |
| GSE19018 | Down | -0.5421682680 |
| GSE19899_A1 | Down | -0.0076488885 |
| GSE19899_A2 | Down | -0.1030463897 |
| PubMed_21979375_A1 | Down | -0.0636797397 |
| PubMed_21979375_A2 | Down | -0.0344190248 |
| GSE35957 | Down | -0.0938927110 |
| GSE36640 | Up | 0.0216089156 |
| GSE54402 | Down | -0.4003316341 |
| GSE9593 | Up | 0.1593972602 |
| GSE43922 | Up | 0.0034371249 |
| GSE24585 | Up | 0.7042288488 |
| GSE37065 | Down | -0.1054108086 |
| GSE28863_A1 | Up | 0.0747027631 |
| GSE28863_A2 | Down | -0.0989567203 |
| GSE28863_A3 | Down | -0.0571577694 |
| GSE28863_A4 | Up | 0.0751550394 |
| GSE48662 | Up | 0.1956411826 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020916 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030973 | Microarray | Functional MTI (Weak) | 18591254 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
