HCSGD entry for PCDH7
1. General information
| Official gene symbol | PCDH7 |
|---|---|
| Entrez ID | 5099 |
| Gene full name | protocadherin 7 |
| Other gene symbols | BH-Pcdh BHPCDH |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9965293264 | 0.0001645264 | 0.9999902473 | 0.0232822581 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0720726500 |
| GSE13712_SHEAR | Down | -1.6661250891 |
| GSE13712_STATIC | Down | -1.0463250678 |
| GSE19018 | Down | -1.2923176872 |
| GSE19899_A1 | Down | -0.7869055703 |
| GSE19899_A2 | Down | -2.0459177644 |
| PubMed_21979375_A1 | Down | -2.4170008899 |
| PubMed_21979375_A2 | Down | -2.1465037243 |
| GSE35957 | Up | 0.3588951123 |
| GSE36640 | Down | -1.1347671906 |
| GSE54402 | Down | -1.3904994392 |
| GSE9593 | Down | -0.0258778361 |
| GSE43922 | Down | -0.8829795647 |
| GSE24585 | Down | -0.6560278961 |
| GSE37065 | Down | -0.2194039960 |
| GSE28863_A1 | Down | -0.0584970077 |
| GSE28863_A2 | Down | -0.0615015771 |
| GSE28863_A3 | Down | -0.3216261731 |
| GSE28863_A4 | Down | -0.0517093502 |
| GSE48662 | Down | -0.2373352724 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023562 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026282 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050339 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
