HCSGD entry for PCDH1
1. General information
| Official gene symbol | PCDH1 |
|---|---|
| Entrez ID | 5097 |
| Gene full name | protocadherin 1 |
| Other gene symbols | PC42 PCDH42 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0005911 | Cell-cell junction | TAS | cellular_component |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0007267 | Cell-cell signaling | TAS | biological_process |
| GO:0007399 | Nervous system development | TAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2728744501 | 0.8666458227 | 0.9701734738 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0185083813 |
| GSE13712_SHEAR | Up | 0.0749791712 |
| GSE13712_STATIC | Up | 0.3541328527 |
| GSE19018 | Up | 0.1962856201 |
| GSE19899_A1 | Down | -0.0193963256 |
| GSE19899_A2 | Down | -0.0021582680 |
| PubMed_21979375_A1 | Down | -0.0330214764 |
| PubMed_21979375_A2 | Down | -0.1250172239 |
| GSE35957 | Up | 0.0051707500 |
| GSE36640 | Up | 0.3393796569 |
| GSE54402 | Up | 0.0709921302 |
| GSE9593 | Down | -0.0151652015 |
| GSE43922 | Up | 0.0662400523 |
| GSE24585 | Down | -0.0039911468 |
| GSE37065 | Down | -0.0773882964 |
| GSE28863_A1 | Down | -0.0873202324 |
| GSE28863_A2 | Up | 0.1792605128 |
| GSE28863_A3 | Up | 0.3497653021 |
| GSE28863_A4 | Down | -0.0299410327 |
| GSE48662 | Up | 0.1254373568 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
