HCSGD entry for HP1BP3
1. General information
| Official gene symbol | HP1BP3 |
|---|---|
| Entrez ID | 50809 |
| Gene full name | heterochromatin protein 1, binding protein 3 |
| Other gene symbols | HP1-BP74 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000786 | Nucleosome | IEA | cellular_component |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006334 | Nucleosome assembly | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9930035143 | 0.0039922913 | 0.9999902473 | 0.1281476829 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1948086662 |
| GSE13712_SHEAR | Down | -0.1195212511 |
| GSE13712_STATIC | Down | -0.1605351250 |
| GSE19018 | Up | 0.0094561036 |
| GSE19899_A1 | Down | -0.6992606693 |
| GSE19899_A2 | Down | -0.9367027468 |
| PubMed_21979375_A1 | Down | -1.0190727944 |
| PubMed_21979375_A2 | Down | -1.2235035155 |
| GSE35957 | Down | -0.3996078998 |
| GSE36640 | Down | -0.5509393336 |
| GSE54402 | Down | -0.4980996681 |
| GSE9593 | Down | -0.1782614376 |
| GSE43922 | Down | -0.7496130825 |
| GSE24585 | Up | 0.4379564892 |
| GSE37065 | Down | -0.0164145753 |
| GSE28863_A1 | Down | -0.3650245556 |
| GSE28863_A2 | Down | -0.2134790996 |
| GSE28863_A3 | Down | -0.5567662474 |
| GSE28863_A4 | Down | -0.4466776544 |
| GSE48662 | Up | 0.3042014851 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT024041 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041380 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-29b-3p | MIMAT0000100 | MIRT048364 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
