HCSGD entry for SYCP3

1. General information

Official gene symbolSYCP3
Entrez ID50511
Gene full namesynaptonemal complex protein 3
Other gene symbolsCOR1 SCP3 SPGF4
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0003677DNA bindingIEAmolecular_function
GO:0005634NucleusIEAcellular_component
GO:0005694ChromosomeIEAcellular_component
GO:0007141Male meiosis INASbiological_process
GO:0035093Spermatogenesis, exchange of chromosomal proteinsIMPbiological_process
GO:0051301Cell divisionIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.81847276700.62825123290.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0237463513
GSE13712_SHEARDown-0.1380433278
GSE13712_STATICDown-0.1197571915
GSE19018Up0.0612713785
GSE19899_A1Up0.0692210043
GSE19899_A2Down-0.1448684952
PubMed_21979375_A1Down-0.0798734429
PubMed_21979375_A2Down-0.0076689638
GSE35957Up0.1670877393
GSE36640Up0.1031249632
GSE54402Down-0.3526396225
GSE9593Down-0.0535984686
GSE43922Up0.0131644513
GSE24585Up0.1365563993
GSE37065Up0.0654986176
GSE28863_A1Down-0.0237338930
GSE28863_A2Up0.0475399186
GSE28863_A3Up0.0443082554
GSE28863_A4Down-0.0235652913
GSE48662Up0.0242234867

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.