HCSGD entry for NEO1
1. General information
| Official gene symbol | NEO1 |
|---|---|
| Entrez ID | 4756 |
| Gene full name | neogenin 1 |
| Other gene symbols | IGDCC2 NGN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004872 | Receptor activity | IEA | molecular_function |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0007520 | Myoblast fusion | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0042692 | Muscle cell differentiation | TAS | biological_process |
| GO:0045296 | Cadherin binding | IEA | molecular_function |
| GO:0051149 | Positive regulation of muscle cell differentiation | TAS | biological_process |
| GO:0055072 | Iron ion homeostasis | IGI | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0801635652 | 0.3554051024 | 0.5965465649 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2550149889 |
| GSE13712_SHEAR | Down | -0.0298155133 |
| GSE13712_STATIC | Down | -0.0876569996 |
| GSE19018 | Up | 0.2536528531 |
| GSE19899_A1 | Down | -0.4917491824 |
| GSE19899_A2 | Up | 0.0761795705 |
| PubMed_21979375_A1 | Down | -0.6055581726 |
| PubMed_21979375_A2 | Up | 0.3956574865 |
| GSE35957 | Up | 0.4391714505 |
| GSE36640 | Up | 2.2820184028 |
| GSE54402 | Down | -0.2851975589 |
| GSE9593 | Down | -0.0117729642 |
| GSE43922 | Down | -0.3982170005 |
| GSE24585 | Up | 0.2853248496 |
| GSE37065 | Down | -0.2496254572 |
| GSE28863_A1 | Down | -0.1788419966 |
| GSE28863_A2 | Up | 0.1588974801 |
| GSE28863_A3 | Up | 0.1859259964 |
| GSE28863_A4 | Up | 0.0172138978 |
| GSE48662 | Up | 0.8700265687 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-590-3p | MIMAT0004801 | MIRT016178 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-32-5p | MIMAT0000090 | MIRT028322 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-484 | MIMAT0002174 | MIRT041971 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044583 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-183-5p | MIMAT0000261 | MIRT047083 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
