HCSGD entry for MSH4
1. General information
| Official gene symbol | MSH4 |
|---|---|
| Entrez ID | 4438 |
| Gene full name | mutS homolog 4 (E. coli) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000710 | Meiotic mismatch repair | IRD | biological_process |
| GO:0000795 | Synaptonemal complex | IBA | cellular_component |
| GO:0001541 | Ovarian follicle development | IEA | biological_process |
| GO:0003677 | DNA binding | TAS | molecular_function |
| GO:0003684 | Damaged DNA binding | IRD | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0006200 | ATP catabolic process | IBA | biological_process |
| GO:0007131 | Reciprocal meiotic recombination | IBA | biological_process |
| GO:0007283 | Spermatogenesis | IEA | biological_process |
| GO:0007292 | Female gamete generation | IEA | biological_process |
| GO:0008094 | DNA-dependent ATPase activity | IBA | molecular_function |
| GO:0030983 | Mismatched DNA binding | IBA | molecular_function |
| GO:0032300 | Mismatch repair complex | IRD | cellular_component |
| GO:0045143 | Homologous chromosome segregation | IBA | biological_process |
| GO:0051026 | Chiasma assembly | IBA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5283468333 | 0.7930047263 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2467702718 |
| GSE13712_SHEAR | Down | -0.0844617210 |
| GSE13712_STATIC | Down | -0.0034088373 |
| GSE19018 | Down | -0.0865439332 |
| GSE19899_A1 | Up | 0.1416357836 |
| GSE19899_A2 | Up | 0.0000318051 |
| PubMed_21979375_A1 | Up | 0.5554385933 |
| PubMed_21979375_A2 | Down | -0.0595052644 |
| GSE35957 | Up | 0.0605441032 |
| GSE36640 | Up | 0.3006931289 |
| GSE54402 | Up | 0.1915677513 |
| GSE9593 | Down | -0.2991672145 |
| GSE43922 | Up | 0.0198779802 |
| GSE24585 | Down | -0.3614242651 |
| GSE37065 | Up | 0.0429046137 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.0446457437 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
