HCSGD entry for CCDC88C
1. General information
| Official gene symbol | CCDC88C |
|---|---|
| Entrez ID | 440193 |
| Gene full name | coiled-coil domain containing 88C |
| Other gene symbols | DAPLE HKRP2 KIAA1509 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001932 | Regulation of protein phosphorylation | ISS | biological_process |
| GO:0016055 | Wnt signaling pathway | IEA | biological_process |
| GO:0030165 | PDZ domain binding | ISS | molecular_function |
| GO:0031648 | Protein destabilization | ISS | biological_process |
| GO:0043621 | Protein self-association | ISS | molecular_function |
| GO:0051260 | Protein homooligomerization | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2353893697 | 0.7724386611 | 0.9189681993 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0668942517 |
| GSE13712_SHEAR | Down | -1.0127326258 |
| GSE13712_STATIC | Down | -0.3635661894 |
| GSE19018 | Down | -0.0060102069 |
| GSE19899_A1 | Up | 0.0961439319 |
| GSE19899_A2 | Up | 0.4098454799 |
| PubMed_21979375_A1 | Up | 0.2984404794 |
| PubMed_21979375_A2 | Up | 0.2697983726 |
| GSE35957 | Up | 0.0173955188 |
| GSE36640 | Up | 0.0958160349 |
| GSE54402 | Up | 0.2658874206 |
| GSE9593 | Up | 0.0025972518 |
| GSE43922 | Up | 0.6402211272 |
| GSE24585 | Down | -0.2715183860 |
| GSE37065 | Up | 0.0119266012 |
| GSE28863_A1 | Down | -0.1047350807 |
| GSE28863_A2 | Down | -0.0636305922 |
| GSE28863_A3 | Up | 0.2266338122 |
| GSE28863_A4 | Up | 0.1159712157 |
| GSE48662 | Up | 0.1680690128 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017297 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-23b-3p | MIMAT0000418 | MIRT023465 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-1 | MIMAT0000416 | MIRT023565 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT048817 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050556 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
