HCSGD entry for CAPRIN1
1. General information
| Official gene symbol | CAPRIN1 |
|---|---|
| Entrez ID | 4076 |
| Gene full name | cell cycle associated protein 1 |
| Other gene symbols | GPIAP1 GPIP137 M11S1 RNG105 p137GPI |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000932 | Cytoplasmic mRNA processing body | IEA ISS | cellular_component |
| GO:0003723 | RNA binding | IEA ISS | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0010494 | Cytoplasmic stress granule | IEA ISS | cellular_component |
| GO:0017148 | Negative regulation of translation | IEA ISS | biological_process |
| GO:0030425 | Dendrite | IEA | cellular_component |
| GO:0050775 | Positive regulation of dendrite morphogenesis | IEA ISS | biological_process |
| GO:0061003 | Positive regulation of dendritic spine morphogenesis | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7711374834 | 0.6663835303 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0108404115 |
| GSE13712_SHEAR | Down | -0.0629955958 |
| GSE13712_STATIC | Up | 0.0640065037 |
| GSE19018 | Down | -0.2718503877 |
| GSE19899_A1 | Up | 0.0062452912 |
| GSE19899_A2 | Down | -0.1142374947 |
| PubMed_21979375_A1 | Down | -0.1640578171 |
| PubMed_21979375_A2 | Up | 0.0401139476 |
| GSE35957 | Up | 0.0845124993 |
| GSE36640 | Down | -0.0214104370 |
| GSE54402 | Down | -0.0666385191 |
| GSE9593 | Down | -0.0387999669 |
| GSE43922 | Down | -0.0215797438 |
| GSE24585 | Up | 0.0020634440 |
| GSE37065 | Up | 0.0213314682 |
| GSE28863_A1 | Up | 0.2682401037 |
| GSE28863_A2 | Up | 0.1574454890 |
| GSE28863_A3 | Up | 0.0663014627 |
| GSE28863_A4 | Up | 0.1694073197 |
| GSE48662 | Down | -0.0880275596 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT005086 | Luciferase reporter assay//qRT-PCR//Western blot | Functional MTI | 19250063 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022856 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-1 | MIMAT0000416 | MIRT023918 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025338 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030874 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-1296-5p | MIMAT0005794 | MIRT036082 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040683 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042167 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046795 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049828 | CLASH//qRT-PCR | Functional MTI (WeaK) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | 1 | hsa-miR-16 | 19250063 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
