HCSGD entry for LMO7
1. General information
| Official gene symbol | LMO7 |
|---|---|
| Entrez ID | 4008 |
| Gene full name | LIM domain 7 |
| Other gene symbols | FBX20 FBXO20 LOMP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000151 | Ubiquitin ligase complex | NAS | cellular_component |
| GO:0004842 | Ubiquitin-protein ligase activity | NAS | molecular_function |
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0005737 | Cytoplasm | TAS | cellular_component |
| GO:0005913 | Cell-cell adherens junction | IEA | cellular_component |
| GO:0008022 | Protein C-terminus binding | IEA | molecular_function |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016324 | Apical plasma membrane | IEA | cellular_component |
| GO:0016337 | Cell-cell adhesion | IEA | biological_process |
| GO:0016567 | Protein ubiquitination | NAS | biological_process |
| GO:0042805 | Actinin binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9537840242 | 0.0004791459 | 0.9999902473 | 0.0410707792 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.5501127013 |
| GSE13712_SHEAR | Up | 0.0356748792 |
| GSE13712_STATIC | Down | -0.3589363697 |
| GSE19018 | Down | -0.5442254546 |
| GSE19899_A1 | Down | -0.9921375060 |
| GSE19899_A2 | Down | -1.9464070373 |
| PubMed_21979375_A1 | Down | -3.3628540129 |
| PubMed_21979375_A2 | Down | -2.5489088790 |
| GSE35957 | Up | 0.4241067758 |
| GSE36640 | Down | -0.0482310652 |
| GSE54402 | Down | -1.2183578498 |
| GSE9593 | Up | 0.5346963327 |
| GSE43922 | Down | -2.5455395627 |
| GSE24585 | Up | 0.1765531173 |
| GSE37065 | Down | -0.3539432341 |
| GSE28863_A1 | Down | -0.3337970993 |
| GSE28863_A2 | Down | -0.4735175230 |
| GSE28863_A3 | Down | -0.1487586274 |
| GSE28863_A4 | Up | 0.2947921326 |
| GSE48662 | Down | -0.4962159236 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027702 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031907 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
