HCSGD entry for SNX19
1. General information
| Official gene symbol | SNX19 |
|---|---|
| Entrez ID | 399979 |
| Gene full name | sorting nexin 19 |
| Other gene symbols | CHET8 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0030659 | Cytoplasmic vesicle membrane | IEA | cellular_component |
| GO:0035091 | Phosphatidylinositol binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2721922951 | 0.8407535352 | 0.9692063582 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1101606025 |
| GSE13712_SHEAR | Up | 0.0799112939 |
| GSE13712_STATIC | Up | 0.0405184595 |
| GSE19018 | Down | -0.1889726351 |
| GSE19899_A1 | Down | -0.0100032685 |
| GSE19899_A2 | Down | -0.0566692387 |
| PubMed_21979375_A1 | Down | -0.1718365521 |
| PubMed_21979375_A2 | Up | 0.2683343159 |
| GSE35957 | Up | 0.0854758668 |
| GSE36640 | Up | 0.0590961476 |
| GSE54402 | Up | 0.0127683824 |
| GSE9593 | Up | 0.3848043205 |
| GSE43922 | Up | 0.1477296295 |
| GSE24585 | Up | 0.1032141596 |
| GSE37065 | Up | 0.0209172925 |
| GSE28863_A1 | Up | 0.6782679111 |
| GSE28863_A2 | Up | 0.5091845624 |
| GSE28863_A3 | Down | -0.2595889369 |
| GSE28863_A4 | Up | 0.0259317722 |
| GSE48662 | Down | -0.0960636656 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-376a-5p | MIMAT0003386 | MIRT001858 | Luciferase reporter assay | Non-Functional MTI | 17322061 |
| hsa-miR-27b-3p | MIMAT0000419 | MIRT046203 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
