HCSGD entry for AMIGO2
1. General information
| Official gene symbol | AMIGO2 |
|---|---|
| Entrez ID | 347902 |
| Gene full name | adhesion molecule with Ig-like domain 2 |
| Other gene symbols | ALI1 AMIGO-2 DEGA |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007156 | Homophilic cell adhesion | ISS | biological_process |
| GO:0007157 | Heterophilic cell-cell adhesion | ISS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0043066 | Negative regulation of apoptotic process | IEA | biological_process |
| GO:0043069 | Negative regulation of programmed cell death | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8963419171 | 0.0002044983 | 0.9999902473 | 0.0251523364 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.8675495870 |
| GSE13712_SHEAR | Down | -0.3064950948 |
| GSE13712_STATIC | Up | 0.1790803754 |
| GSE19018 | Down | -1.7344956172 |
| GSE19899_A1 | Down | -0.9076571831 |
| GSE19899_A2 | Down | -1.9375000057 |
| PubMed_21979375_A1 | Down | -2.9829003962 |
| PubMed_21979375_A2 | Down | -1.9882832607 |
| GSE35957 | Up | 0.0636488968 |
| GSE36640 | Up | 1.1371723836 |
| GSE54402 | Down | -0.6896171104 |
| GSE9593 | Down | -0.9336090280 |
| GSE43922 | Down | -0.5770170993 |
| GSE24585 | Up | 0.1468577188 |
| GSE37065 | Down | -0.6362638979 |
| GSE28863_A1 | Down | -0.4385260386 |
| GSE28863_A2 | Down | -0.7560788533 |
| GSE28863_A3 | Down | -0.1891723499 |
| GSE28863_A4 | Down | -0.0292962019 |
| GSE48662 | Up | 0.5729156420 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT001573 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022417 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
