HCSGD entry for ZNF678
1. General information
| Official gene symbol | ZNF678 |
|---|---|
| Entrez ID | 339500 |
| Gene full name | zinc finger protein 678 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9517529425 | 0.0465226967 | 0.9999902473 | 0.4044002312 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0869185639 |
| GSE13712_SHEAR | Down | -0.1744587251 |
| GSE13712_STATIC | Up | 0.0036135352 |
| GSE19018 | Down | -0.3404342949 |
| GSE19899_A1 | Down | -0.0050305632 |
| GSE19899_A2 | Down | -0.8227395577 |
| PubMed_21979375_A1 | Down | -0.0252579883 |
| PubMed_21979375_A2 | Down | -0.4652898901 |
| GSE35957 | Down | -0.5140208958 |
| GSE36640 | Down | -0.6704704380 |
| GSE54402 | Down | -0.1617871330 |
| GSE9593 | Down | -0.2169577644 |
| GSE43922 | Down | -0.2580826558 |
| GSE24585 | Down | -0.1250683054 |
| GSE37065 | Up | 0.2139257995 |
| GSE28863_A1 | Up | 0.1386748857 |
| GSE28863_A2 | Up | 0.7383519361 |
| GSE28863_A3 | Down | -0.5269383481 |
| GSE28863_A4 | Down | -0.1950115932 |
| GSE48662 | Up | 0.1556136215 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-421 | MIMAT0003339 | MIRT016109 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT017986 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
