HCSGD entry for CHSY3
1. General information
| Official gene symbol | CHSY3 |
|---|---|
| Entrez ID | 337876 |
| Gene full name | chondroitin sulfate synthase 3 |
| Other gene symbols | CHSY2 CSS3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0030206 | Chondroitin sulfate biosynthetic process | TAS | biological_process |
| GO:0032580 | Golgi cisterna membrane | IEA | cellular_component |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0047238 | Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity | IEA | molecular_function |
| GO:0050510 | N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9579495916 | 0.0009785722 | 0.9999902473 | 0.0590756881 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -1.1768820202 |
| GSE13712_SHEAR | Down | -0.5819455334 |
| GSE13712_STATIC | Down | -1.6031736725 |
| GSE19018 | Down | -1.2161054874 |
| GSE19899_A1 | Down | -0.2012829925 |
| GSE19899_A2 | Down | -1.2949678627 |
| PubMed_21979375_A1 | Up | 0.5012835021 |
| PubMed_21979375_A2 | Down | -0.6135325943 |
| GSE35957 | Down | -0.0165755168 |
| GSE36640 | Up | 0.0418103820 |
| GSE54402 | Down | -0.3830993315 |
| GSE9593 | Down | -0.6856904132 |
| GSE43922 | Up | 0.0247544521 |
| GSE24585 | Up | 0.7184114924 |
| GSE37065 | Down | -0.0638294531 |
| GSE28863_A1 | Up | 0.0382137210 |
| GSE28863_A2 | Down | -0.6756921508 |
| GSE28863_A3 | Down | -0.2672891078 |
| GSE28863_A4 | Down | -0.2838860973 |
| GSE48662 | Down | -1.3692133399 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022942 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024796 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026772 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-484 | MIMAT0002174 | MIRT042238 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
