HCSGD entry for HOXC13
1. General information
| Official gene symbol | HOXC13 |
|---|---|
| Entrez ID | 3229 |
| Gene full name | homeobox C13 |
| Other gene symbols | ECTD9 HOX3 HOX3G |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001077 | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription | IEA | molecular_function |
| GO:0001942 | Hair follicle development | IEA | biological_process |
| GO:0003682 | Chromatin binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0009653 | Anatomical structure morphogenesis | TAS | biological_process |
| GO:0009952 | Anterior/posterior pattern specification | IEA | biological_process |
| GO:0035878 | Nail development | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0043587 | Tongue morphogenesis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3971613920 | 0.8249646442 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0837817719 |
| GSE13712_SHEAR | Up | 0.0306897035 |
| GSE13712_STATIC | Up | 0.0636000149 |
| GSE19018 | Up | 0.1463367311 |
| GSE19899_A1 | Up | 0.1217496399 |
| GSE19899_A2 | Down | -0.0796538371 |
| PubMed_21979375_A1 | Up | 0.0837860578 |
| PubMed_21979375_A2 | Down | -0.1036681303 |
| GSE35957 | Up | 0.2757574870 |
| GSE36640 | Down | -0.0597940945 |
| GSE54402 | Down | -0.0295993967 |
| GSE9593 | Up | 0.1175342822 |
| GSE43922 | Up | 0.0324405436 |
| GSE24585 | Up | 0.2017117116 |
| GSE37065 | Up | 0.1981398419 |
| GSE28863_A1 | Up | 0.0426356902 |
| GSE28863_A2 | Down | -0.2762726483 |
| GSE28863_A3 | Up | 0.2653631739 |
| GSE28863_A4 | Down | -0.0113759357 |
| GSE48662 | Up | 0.0903896869 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-31-5p | MIMAT0000089 | MIRT004974 | Luciferase reporter assay//qRT-PCR | Non-Functional MTI | 19524507 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039788 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
